Traccuracy
latest
Examples:
Benchmarking Cell Tracking Challenge Data
Traccuracy API:
API Reference
CLI
Traccuracy
Index
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Index
Symbols
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A
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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P
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R
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S
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T
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V
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W
Symbols
--edge-fn-weight
traccuracy-run-aogm command line option
--edge-fp-weight
traccuracy-run-aogm command line option
--edge-ws-weight
traccuracy-run-aogm command line option
--frame-buffer
traccuracy-run-divisions-on-ctc command line option
traccuracy-run-divisions-on-iou command line option
--gt-track-path
traccuracy-run-aogm command line option
traccuracy-run-ctc command line option
traccuracy-run-divisions-on-ctc command line option
traccuracy-run-divisions-on-iou command line option
--install-completion
traccuracy command line option
--loader
traccuracy-run-aogm command line option
traccuracy-run-ctc command line option
traccuracy-run-divisions-on-ctc command line option
traccuracy-run-divisions-on-iou command line option
--match-threshold
traccuracy-run-divisions-on-iou command line option
--out-path
traccuracy-run-aogm command line option
traccuracy-run-ctc command line option
traccuracy-run-divisions-on-ctc command line option
traccuracy-run-divisions-on-iou command line option
--pred-track-path
traccuracy-run-aogm command line option
traccuracy-run-ctc command line option
traccuracy-run-divisions-on-ctc command line option
traccuracy-run-divisions-on-iou command line option
--show-completion
traccuracy command line option
--vertex-fn-weight
traccuracy-run-aogm command line option
--vertex-fp-weight
traccuracy-run-aogm command line option
--vertex-ns-weight
traccuracy-run-aogm command line option
A
AOGMMetrics (class in traccuracy.metrics)
(class in traccuracy.metrics._ctc)
C
compute() (traccuracy.metrics._base.Metric method)
compute_mapping() (traccuracy.matchers._base.Matcher method)
compute_overlap() (in module traccuracy.matchers._compute_overlap)
compute_overlap_3D() (in module traccuracy.matchers._compute_overlap)
ctc_to_graph() (in module traccuracy.loaders._ctc)
CTCMatcher (class in traccuracy.matchers)
(class in traccuracy.matchers._ctc)
CTCMetrics (class in traccuracy.metrics)
(class in traccuracy.metrics._ctc)
D
detection_test() (in module traccuracy.matchers._ctc)
DivisionMetrics (class in traccuracy.metrics)
(class in traccuracy.metrics._divisions)
E
EdgeFlag (class in traccuracy)
(class in traccuracy._tracking_graph)
edges (traccuracy._tracking_graph.TrackingGraph property)
(traccuracy.TrackingGraph property)
end_frame (traccuracy._tracking_graph.TrackingGraph attribute)
(traccuracy.TrackingGraph attribute)
evaluate_ctc_events() (in module traccuracy.track_errors._ctc)
F
FALSE_NEG (traccuracy._tracking_graph.EdgeFlag attribute)
(traccuracy._tracking_graph.NodeFlag attribute)
(traccuracy.EdgeFlag attribute)
(traccuracy.NodeFlag attribute)
FALSE_POS (traccuracy._tracking_graph.EdgeFlag attribute)
(traccuracy._tracking_graph.NodeFlag attribute)
(traccuracy.EdgeFlag attribute)
(traccuracy.NodeFlag attribute)
find_gt_node_matches() (in module traccuracy._utils)
find_pred_node_matches() (in module traccuracy._utils)
FN_DIV (traccuracy._tracking_graph.NodeFlag attribute)
(traccuracy.NodeFlag attribute)
FP_DIV (traccuracy._tracking_graph.NodeFlag attribute)
(traccuracy.NodeFlag attribute)
frame_key (traccuracy._tracking_graph.TrackingGraph attribute)
(traccuracy.TrackingGraph attribute)
G
get_connected_components() (traccuracy._tracking_graph.TrackingGraph method)
(traccuracy.TrackingGraph method)
get_divisions() (traccuracy._tracking_graph.TrackingGraph method)
(traccuracy.TrackingGraph method)
get_edge_errors() (in module traccuracy.track_errors._ctc)
get_edges_with_flag() (traccuracy._tracking_graph.TrackingGraph method)
(traccuracy.TrackingGraph method)
get_labels_with_overlap() (in module traccuracy.matchers)
(in module traccuracy.matchers._compute_overlap)
get_location() (traccuracy._tracking_graph.TrackingGraph method)
(traccuracy.TrackingGraph method)
get_merges() (traccuracy._tracking_graph.TrackingGraph method)
(traccuracy.TrackingGraph method)
get_nodes_with_flag() (traccuracy._tracking_graph.TrackingGraph method)
(traccuracy.TrackingGraph method)
get_subgraph() (traccuracy._tracking_graph.TrackingGraph method)
(traccuracy.TrackingGraph method)
get_tracklets() (traccuracy._tracking_graph.TrackingGraph method)
(traccuracy.TrackingGraph method)
get_vertex_errors() (in module traccuracy.track_errors._ctc)
get_weighted_edge_error_sum() (in module traccuracy.metrics._ctc)
get_weighted_error_sum() (in module traccuracy.metrics._ctc)
get_weighted_vertex_error_sum() (in module traccuracy.metrics._ctc)
GT_DIR
traccuracy-run-aogm command line option
traccuracy-run-ctc command line option
traccuracy-run-divisions-on-ctc command line option
traccuracy-run-divisions-on-iou command line option
H
has_value() (traccuracy._tracking_graph.NodeFlag class method)
(traccuracy.NodeFlag class method)
I
info (traccuracy.matchers._base.Matcher property)
(traccuracy.metrics._base.Metric property)
INTERTRACK_EDGE (traccuracy._tracking_graph.EdgeFlag attribute)
(traccuracy.EdgeFlag attribute)
IOUMatcher (class in traccuracy.matchers)
(class in traccuracy.matchers._iou)
L
load_ctc_data() (in module traccuracy.loaders)
(in module traccuracy.loaders._ctc)
location_keys (traccuracy._tracking_graph.TrackingGraph attribute)
(traccuracy.TrackingGraph attribute)
logger (in module traccuracy._tracking_graph)
(in module traccuracy.loaders._ctc)
(in module traccuracy.matchers._base)
(in module traccuracy.track_errors._ctc)
(in module traccuracy.track_errors.divisions)
M
match_iou() (in module traccuracy.matchers._iou)
Matched (class in traccuracy.matchers)
(class in traccuracy.matchers._base)
Matcher (class in traccuracy.matchers._base)
Metric (class in traccuracy.metrics._base)
module
traccuracy
traccuracy._run_metrics
traccuracy._tracking_graph
traccuracy._utils
traccuracy.loaders
traccuracy.loaders._ctc
traccuracy.matchers
traccuracy.matchers._base
traccuracy.matchers._compute_overlap
traccuracy.matchers._ctc
traccuracy.matchers._iou
traccuracy.metrics
traccuracy.metrics._base
traccuracy.metrics._ctc
traccuracy.metrics._divisions
traccuracy.metrics._track_overlap
traccuracy.track_errors
traccuracy.track_errors._ctc
traccuracy.track_errors.divisions
N
needs_one_to_one (traccuracy.metrics._base.Metric attribute)
(traccuracy.metrics._divisions.DivisionMetrics attribute)
(traccuracy.metrics.DivisionMetrics attribute)
NodeFlag (class in traccuracy)
(class in traccuracy._tracking_graph)
nodes (traccuracy._tracking_graph.TrackingGraph property)
(traccuracy.TrackingGraph property)
nodes_by_frame (traccuracy._tracking_graph.TrackingGraph attribute)
(traccuracy.TrackingGraph attribute)
NON_SPLIT (traccuracy._tracking_graph.NodeFlag attribute)
(traccuracy.NodeFlag attribute)
P
PRED_DIR
traccuracy-run-aogm command line option
traccuracy-run-ctc command line option
traccuracy-run-divisions-on-ctc command line option
traccuracy-run-divisions-on-iou command line option
R
Results (class in traccuracy.metrics._base)
run_metrics() (in module traccuracy)
(in module traccuracy._run_metrics)
S
set_flag_on_all_edges() (traccuracy._tracking_graph.TrackingGraph method)
(traccuracy.TrackingGraph method)
set_flag_on_all_nodes() (traccuracy._tracking_graph.TrackingGraph method)
(traccuracy.TrackingGraph method)
set_flag_on_edge() (traccuracy._tracking_graph.TrackingGraph method)
(traccuracy.TrackingGraph method)
set_flag_on_node() (traccuracy._tracking_graph.TrackingGraph method)
(traccuracy.TrackingGraph method)
signature (in module traccuracy.matchers._compute_overlap)
start_frame (traccuracy._tracking_graph.TrackingGraph attribute)
(traccuracy.TrackingGraph attribute)
supports_many_to_many (traccuracy.metrics._base.Metric attribute)
supports_many_to_one (traccuracy.metrics._base.Metric attribute)
(traccuracy.metrics._ctc.AOGMMetrics attribute)
(traccuracy.metrics._track_overlap.TrackOverlapMetrics attribute)
(traccuracy.metrics.AOGMMetrics attribute)
(traccuracy.metrics.TrackOverlapMetrics attribute)
supports_one_to_many (traccuracy.metrics._base.Metric attribute)
T
to_dict() (traccuracy.metrics._base.Results method)
TP_DIV (traccuracy._tracking_graph.NodeFlag attribute)
(traccuracy.NodeFlag attribute)
traccuracy
module
traccuracy command line option
--install-completion
--show-completion
traccuracy-run-aogm command line option
--edge-fn-weight
--edge-fp-weight
--edge-ws-weight
--gt-track-path
--loader
--out-path
--pred-track-path
--vertex-fn-weight
--vertex-fp-weight
--vertex-ns-weight
GT_DIR
PRED_DIR
traccuracy-run-ctc command line option
--gt-track-path
--loader
--out-path
--pred-track-path
GT_DIR
PRED_DIR
traccuracy-run-divisions-on-ctc command line option
--frame-buffer
--gt-track-path
--loader
--out-path
--pred-track-path
GT_DIR
PRED_DIR
traccuracy-run-divisions-on-iou command line option
--frame-buffer
--gt-track-path
--loader
--match-threshold
--out-path
--pred-track-path
GT_DIR
PRED_DIR
traccuracy._run_metrics
module
traccuracy._tracking_graph
module
traccuracy._utils
module
traccuracy.loaders
module
traccuracy.loaders._ctc
module
traccuracy.matchers
module
traccuracy.matchers._base
module
traccuracy.matchers._compute_overlap
module
traccuracy.matchers._ctc
module
traccuracy.matchers._iou
module
traccuracy.metrics
module
traccuracy.metrics._base
module
traccuracy.metrics._ctc
module
traccuracy.metrics._divisions
module
traccuracy.metrics._track_overlap
module
traccuracy.track_errors
module
traccuracy.track_errors._ctc
module
traccuracy.track_errors.divisions
module
TrackingGraph (class in traccuracy)
(class in traccuracy._tracking_graph)
TrackOverlapMetrics (class in traccuracy.metrics)
(class in traccuracy.metrics._track_overlap)
TRUE_POS (traccuracy._tracking_graph.EdgeFlag attribute)
(traccuracy._tracking_graph.NodeFlag attribute)
(traccuracy.EdgeFlag attribute)
(traccuracy.NodeFlag attribute)
V
version (traccuracy.metrics._base.Results property)
W
WRONG_SEMANTIC (traccuracy._tracking_graph.EdgeFlag attribute)
(traccuracy.EdgeFlag attribute)
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