traccuracy.matchers._ctc

Module Contents

Classes

CTCMatcher

Match graph nodes based on measure used in cell tracking challenge benchmarking.
class traccuracy.matchers._ctc.CTCMatcher[source]

Match graph nodes based on measure used in cell tracking challenge benchmarking.

A computed marker (segmentation) is matched to a reference marker if the computed marker covers a majority of the reference marker.

Each reference marker can therefore only be matched to one computed marker, but multiple reference markers can be assigned to a single computed marker.

See https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0144959 for complete details.

property info: dict[str, Any]

Dictionary of Matcher name and any parameters

compute_mapping(gt_graph: traccuracy._tracking_graph.TrackingGraph, pred_graph: traccuracy._tracking_graph.TrackingGraph) → traccuracy.matchers._matched.Matched

Run the matching on a given set of gt and pred TrackingGraph and returns a Matched object with a new copy of each TrackingGraph

Parameters:
Returns:

Matched data object

Return type:

matched (traccuracy.matchers.Matched)

Raises:

ValueError – gt and pred must be a TrackingGraph object